PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000001.1_g00042.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 426aa MW: 45837 Da PI: 9.4677

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000001.1_g00042.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.1	7.3e-06	185	207	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 CpdCg++F+ ++L++H+ + H Itr_sc000001.1_g00042.1 185 ACPDCGEVFPKIESLEHHQAVrH 207 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	184	207	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.746	184	212	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-25	209	423	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.2E-10	210	423	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MALLTFLPPE KQQQQQQPNT QKKQQRKRKQ QLQNPKKQPN KPAKPPSSWD SFKSLLTCKQ 60 VEGSAVHDPA KNGAAGYVLG GPCGSICSFR DVVHGNTSRV VHRADNSPES SSLGQETRLL 120 SKKNGGCSGN SGSSSRSLPA AARSHGASSY GGSSRAMQFR KLSGCYECHT IVDPSRYPMP 180 RTICACPDCG EVFPKIESLE HHQAVRHAVS ELGPEDSSRN IVEIIFKSSW LKKDNPVCKI 240 ERILKVHNTQ RTIQRFEDCR DAVKVRANAA GKKNPRCAAD GNELLRFYCT TLTCALGARG 300 ASSLCGSLPG CGVCTIIRHG FQGNKVAGIR TTASSGRAHD CPNGGNDGRR AMLVCRVIAG 360 RVRRVVEDTG AGDEEAAAPA GLSAGAGSYE SVAGYGGIYS NLEELYVFNP RAILPCFVVI 420 YKAMES

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MALLTFLPPE KQQQQQQPNT QKKQQRKRKQ QLQNPKKQPN KPAKPPSSWD SFKSLLTCKQ  60
VEGSAVHDPA KNGAAGYVLG GPCGSICSFR DVVHGNTSRV VHRADNSPES SSLGQETRLL  120
SKKNGGCSGN SGSSSRSLPA AARSHGASSY GGSSRAMQFR KLSGCYECHT IVDPSRYPMP  180
RTICACPDCG EVFPKIESLE HHQAVRHAVS ELGPEDSSRN IVEIIFKSSW LKKDNPVCKI  240
ERILKVHNTQ RTIQRFEDCR DAVKVRANAA GKKNPRCAAD GNELLRFYCT TLTCALGARG  300
ASSLCGSLPG CGVCTIIRHG FQGNKVAGIR TTASSGRAHD CPNGGNDGRR AMLVCRVIAG  360
RVRRVVEDTG AGDEEAAAPA GLSAGAGSYE SVAGYGGIYS NLEELYVFNP RAILPCFVVI  420
YKAMES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	29	QRKRKQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC182572	2e-54	AC182572.2 Erythranthe guttata clone MGBa-75A14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016568396.1	0.0	PREDICTED: uncharacterized protein LOC107866896
TrEMBL	A0A068UFR5	0.0	A0A068UFR5_COFCA; Uncharacterized protein
STRING	VIT_18s0001g14130.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-162	C2H2-like zinc finger protein